I'm going to be going to another hospital but coming back soon
I will be going to a different hospital for a second opinion but returning back here afterwards.
I'm going to be going to another hospital but( 他の病院に行くん ですが) coming back soon.( すぐ戻ってきます)
I will be going to a different hospital ( 違う病院に行く)for a second opinion( セカンドオピニオンをのために) but returning back here afterwards. ( でもその後はここに戻ってきます)
I'm going to get a second opinion at the XX hospital, but I'll come back here soon.
この場合、次のような言い方ができますよ。
ーI'm going to get a second opinion at the XX hospital, but I'll come back here soon.
「XX病院でセカンドオピニオンを受けてきますが、すぐここに戻ってきます」
to get a second opinion で「セカンドオピニオンを受ける・もらう」
ご参考まで!